Package: EvaluateCore 0.1.3.9000

EvaluateCore: Quality Evaluation of Core Collections

Implements various quality evaluation statistics to assess the value of plant germplasm core collections using qualitative and quantitative phenotypic trait data according to Odong et al. (2015) <doi:10.1007/s00122-012-1971-y>.

Authors:J. Aravind [aut, cre], Vikender Kaur [aut], Dhammaprakash Pandhari Wankhede [aut], Joghee Nanjundan [aut], ICAR-NBGPR [cph]

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EvaluateCore.pdf |EvaluateCore.html✨
EvaluateCore/json (API)
NEWS

# Install 'EvaluateCore' in R:
install.packages('EvaluateCore', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/aravind-j/evaluatecore/issues

Datasets:
  • cassava_CC - IITA Cassava Germplasm Data - Core Collection
  • cassava_EC - IITA Cassava Germplasm Data - Entire Collection

On CRAN:

core-collectionscore-evaluationgenebankgermplasmpgrplant-genetic-resources

24 exports 1 stars 1.16 score 86 dependencies 16 scripts 910 downloads

Last updated 29 days agofrom:94b9f1e5a9. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 18 2024
R-4.5-winOKAug 18 2024
R-4.5-linuxOKAug 18 2024
R-4.4-winOKAug 18 2024
R-4.4-macOKAug 18 2024
R-4.3-winOKAug 18 2024
R-4.3-macOKAug 18 2024

Exports:bar.evaluate.corebox.evaluate.corechisquare.evaluate.corecorr.evaluate.corecoverage.evaluate.corecr.evaluate.coredist.evaluate.corediversity.evaluate.corefreqdist.evaluate.coreiqr.evaluate.corelevene.evaluate.corepca.evaluate.corepdfdist.evaluate.corepercentdiff.evaluate.coreqq.evaluate.corerpr.evaluate.corescv.evaluate.coreshannon.evaluate.coresigntest.evaluate.coresnk.evaluate.corettest.evaluate.corevpf.evaluate.corevr.evaluate.corewilcox.evaluate.core

Dependencies:abindagricolaeAlgDesignbackportsbootbroomcarcarDatacliclustercolorspacecommonmarkcowplotcpp11curlDerivdoBydplyrentropyfansifarvergenericsggcorrplotggplot2ggtextglueGPArotationgridExtragridtextgtableisobandjpegkSampleslabelinglatticelifecyclelme4magrittrmarkdownMASSmathjaxrMatrixMatrixModelsmgcvmicrobenchmarkminqamnormtmodelrmunsellnlmenloptrnnetnumDerivpbkrtestpermutepillarpkgconfigplyrpngpsychpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreshape2rlangscalesSparseMstringistringrSuppDistssurvivaltibbletidyrtidyselectutf8vctrsveganviridisLitewithrxfunxml2

Readme and manuals

Help Manual

Help pageTopics
Bar Plotsbar.evaluate.core
Box Plotsbox.evaluate.core
IITA Cassava Germplasm Data - Core Collectioncassava_CC
IITA Cassava Germplasm Data - Entire Collectioncassava_EC
Chi-squared Test for Homogeneitychisquare.evaluate.core
Phenotypic Correlationscorr.evaluate.core
Class Coveragecoverage.evaluate.core
Coincidence Rate of Rangecr.evaluate.core
Distance Measuresdist.evaluate.core
Diversity Indicesdiversity.evaluate.core
Frequency Distribution Histogramfreqdist.evaluate.core
Interquartile Rangeiqr.evaluate.core
Levene's Testlevene.evaluate.core
Principal Component Analysispca.evaluate.core
Distance Between Probability Distributionspdfdist.evaluate.core
Percentage Difference of Means and Variancespercentdiff.evaluate.core
Quantile-Quantile Plotsqq.evaluate.core
Ratio of Phenotype Retainedrpr.evaluate.core
Synthetic Variation Coefficientscv.evaluate.core
Sign Testsigntest.evaluate.core
Student-Newman-Keuls Testsnk.evaluate.core
Student's t Testttest.evaluate.core
Variance of Phenotypic Frequencyvpf.evaluate.core
Variable Rate of Coefficient of Variationvr.evaluate.core
Wilcoxon Rank Sum Testwilcox.evaluate.core