Package: EvaluateCore 0.1.5.900

EvaluateCore: Quality Evaluation of Core Collections

Implements various quality evaluation statistics to assess the value of plant germplasm core collections using qualitative and quantitative phenotypic trait data according to Odong et al. (2015) <doi:10.1007/s00122-012-1971-y>.

Authors:J. Aravind [aut, cre], Vikender Kaur [aut], Dhammaprakash Pandhari Wankhede [aut], Joghee Nanjundan [aut], ICAR-NBGPR [cph]

EvaluateCore_0.1.5.900.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
EvaluateCore/json (API)
NEWS

# Install 'EvaluateCore' in R:
install.packages('EvaluateCore', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aravind-j/evaluatecore/issues

Pkgdown/docs site:https://aravind-j.github.io

Datasets:
  • cassava_CC - IITA Cassava Germplasm Data - Core Collection
  • cassava_EC - IITA Cassava Germplasm Data - Entire Collection

On CRAN:

Conda:

core-collectionscore-evaluationgenebankgermplasmpgrplant-genetic-resources

3.98 score 1 stars 24 scripts 687 downloads 24 exports 158 dependencies

Last updated from:d11d0c1896. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK244
source / vignettesOK255
linux-release-x86_64OK247
macos-release-arm64OK120
macos-oldrel-arm64OK128
windows-develOK141
windows-releaseOK142
windows-oldrelOK146
wasm-releaseOK161

Exports:bar.evaluate.corebox.evaluate.corechisquare.evaluate.corecorr.evaluate.corecoverage.evaluate.corecr.evaluate.coredist.evaluate.corediversity.evaluate.corefreqdist.evaluate.coreiqr.evaluate.corelevene.evaluate.corepca.evaluate.corepdfdist.evaluate.corepercentdiff.evaluate.coreqq.evaluate.corerpr.evaluate.corescv.evaluate.coreshannon.evaluate.coresigntest.evaluate.coresnk.evaluate.corettest.evaluate.corevpf.evaluate.corevr.evaluate.corewilcox.evaluate.core

Dependencies:abindagricolaeAlgDesignbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurlDerivdigestdoBydoParalleldplyrDTellipseemmeansentropyestimabilityevaluateFactoMineRfarverfastmapflashClustfontawesomeforcatsforeachforecastFormulafracdifffsgenericsggcorrplotggplot2ggrepelggtextglmnetglueGPArotationgridExtragridtextgtablehavenhighrhmshtmltoolshtmlwidgetsisobanditeratorsjomojpegjquerylibjsonliteknitrkSampleslabelinglaterlatticelazyevalleapslifecyclelitedownlme4lmtestmagrittrmarkdownMASSmathjaxrMatrixMatrixModelsmemoisemgcvmicemicrobenchmarkmimeminqamissMDAmitmlmnormtmodelrmultcompViewmvtnormnlmenloptrnnetnumDerivordinalotelpanpbkrtestpermutepillarpkgconfigplyrpngprettyunitsprogresspromisespsychpurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasreshape2rlangrmarkdownrpartS7sassscalesscatterplot3dshapeSparseMstringistringrSuppDistssurvivaltibbletidyrtidyselecttimeDatetinytextzdbucminfurcautf8vctrsveganviridisLitevroomwithrxfunxml2yamlzoo

Readme and manuals

Help Manual

Help pageTopics
Bar Plotsbar.evaluate.core
Box Plotsbox.evaluate.core
IITA Cassava Germplasm Data - Core Collectioncassava_CC
IITA Cassava Germplasm Data - Entire Collectioncassava_EC
Chi-squared Test for Homogeneitychisquare.evaluate.core
Phenotypic Correlationscorr.evaluate.core
Class Coveragecoverage.evaluate.core
Coincidence Rate of Rangecr.evaluate.core
Distance Measuresdist.evaluate.core
Diversity Indicesdiversity.evaluate.core
Frequency Distribution Histogramfreqdist.evaluate.core
Interquartile Rangeiqr.evaluate.core
Levene's Testlevene.evaluate.core
Principal Component Analysispca.evaluate.core
Distance Between Probability Distributionspdfdist.evaluate.core
Percentage Difference of Means and Variancespercentdiff.evaluate.core
Quantile-Quantile Plotsqq.evaluate.core
Ratio of Phenotype Retainedrpr.evaluate.core
Synthetic Variation Coefficientscv.evaluate.core
Sign Testsigntest.evaluate.core
Student-Newman-Keuls Testsnk.evaluate.core
Student's t Testttest.evaluate.core
Variance of Phenotypic Frequencyvpf.evaluate.core
Variable Rate of Coefficient of Variationvr.evaluate.core
Wilcoxon Rank Sum Testwilcox.evaluate.core