{ "_id": "6a23f258a1338011a79ed922", "Package": "EvaluateCore", "Title": "Quality Evaluation of Core Collections", "Version": "0.1.5.900", "Authors@R": "c(\nperson(given = \"J.\", family = \"Aravind\",\nemail = \"j.aravind@icar.org.in\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4791-442X\")),\nperson(given = \"Vikender\", family = \"Kaur\",\nemail = \"vikender.kaur@icar.org.in\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-9698-7329\")),\nperson(given = c(\"Dhammaprakash\", \"Pandhari\"), family = \"Wankhede\",\nemail = \"d.wankhede@icar.org.in\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6384-8664\")),\nperson(given = \"Joghee\", family = \"Nanjundan\",\nemail = \"j.nanjundan@icar.org.in\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6254-7341\")),\nperson(\"ICAR-NBGPR\",\nrole = c(\"cph\"),\ncomment = c(url = \"https://nbpgr.org.in/\")))", "Description": "Implements various quality evaluation statistics to assess\nthe value of plant germplasm core collections using qualitative\nand quantitative phenotypic trait data according to Odong et\nal. (2015) .", "Copyright": "2018-2026, ICAR-NBPGR", "License": "GPL-2 | GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "URL": "https://github.com/aravind-j/EvaluateCore\nhttps://CRAN.R-project.org/package=EvaluateCore\nhttps://aravind-j.github.io/EvaluateCore/\nhttps://doi.org/10.5281/zenodo.3875930", "BugReports": "https://github.com/aravind-j/EvaluateCore/issues", "RdMacros": "mathjaxr, Rdpack", "LazyData": "true", "Config/pak/sysreqs": "cmake make libicu-dev libjpeg-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev", "Repository": "https://aravind-j.r-universe.dev", "Date/Publication": "2026-04-29 18:15:08 UTC", "RemoteUrl": "https://github.com/aravind-j/evaluatecore", "RemoteRef": "HEAD", "RemoteSha": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-06 10:06:46 UTC", "User": "root" }, "Author": "J. Aravind [aut, cre] (ORCID: ),\nVikender Kaur [aut] (ORCID: ),\nDhammaprakash Pandhari Wankhede [aut] (ORCID:\n),\nJoghee Nanjundan [aut] (ORCID: ),\nICAR-NBGPR [cph] (url: https://nbpgr.org.in/)", "Maintainer": "J. Aravind ", "MD5sum": "5aebb6fac845964bf4f8d0abd7b7a7fd", "_user": "aravind-j", "_type": "src", "_file": "EvaluateCore_0.1.5.900.tar.gz", "_fileid": "248e6d36199f73cad07f3fd248c0596a3edaf1309ac5c2a84cdd004f2d54c2d3", "_filesize": 588863, "_sha256": "248e6d36199f73cad07f3fd248c0596a3edaf1309ac5c2a84cdd004f2d54c2d3", "_created": "2026-06-06T10:06:46.000Z", "_published": "2026-06-06T10:11:36.276Z", "_distro": "noble", "_jobs": [ { "job": 79869603399, "time": 244, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7453519683" }, { "job": 79869603404, "time": 247, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7453520096" }, { "job": 79869603389, "time": 128, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7453507787" }, { "job": 79869603380, "time": 120, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7453506979" }, { "job": 79869361588, "time": 255, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7453494568" }, { "job": 79869603388, "time": 161, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7453511230" }, { "job": 79869603417, "time": 141, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7453509115" }, { "job": 79869603403, "time": 146, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7453509694" }, { "job": 79869603396, "time": 142, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7453509254" } ], "_buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/aravind-j/evaluatecore", "_commit": { "id": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "author": "GitHub Actions ", "committer": "GitHub Actions ", "message": "Re-build README.md\n", "time": 1777486508 }, "_maintainer": { "name": "J. Aravind", "email": "j.aravind@icar.org.in", "login": "aravind-j", "orcid": "0000-0002-4791-442X", "description": "Scientist,\nDivision of Germplasm Conservation,\nICAR-National Bureau of Plant Genetic Resources", "uuid": 13416379 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "agricolae", "role": "Imports" }, { "package": "boot", "role": "Imports" }, { "package": "car", "role": "Imports" }, { "package": "cluster", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "entropy", "role": "Imports" }, { "package": "ggcorrplot", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggtext", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "kSamples", "role": "Imports" }, { "package": "mathjaxr", "role": "Imports" }, { "package": "missMDA", "role": "Imports" }, { "package": "psych", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "vegan", "role": "Imports" }, { "package": "corehunter", "role": "Suggests" }, { "package": "httr", "role": "Suggests" }, { "package": "pander", "role": "Suggests" }, { "package": "RCurl", "role": "Suggests" }, { "package": "rJava", "version": ">= 0.9-8", "role": "Suggests" }, { "package": "XML", "role": "Suggests" } ], "_owner": "aravind-j", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-50", "n": 5 }, { "week": "2025-51", "n": 4 }, { "week": "2026-02", "n": 2 }, { "week": "2026-03", "n": 3 }, { "week": "2026-09", "n": 1 }, { "week": "2026-16", "n": 8 }, { "week": "2026-17", "n": 1 }, { "week": "2026-18", "n": 3 } ], "_tags": [ { "name": "CRAN_0.1.4", "date": "2025-12-12" }, { "name": "CRAN_0.1.5", "date": "2026-04-21" } ], "_topics": [ "core-collections", "core-evaluation", "genebank", "germplasm", "pgr", "plant-genetic-resources" ], "_stars": 1, "_contributors": [ { "user": "aravind-j", "count": 219, "uuid": 13416379 } ], "_userbio": { "uuid": 13416379, "type": "user", "name": "J. Aravind", "description": "Scientist,\r\nDivision of Germplasm Conservation,\r\nICAR-National Bureau of Plant Genetic Resources" }, "_downloads": { "count": 687, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/EvaluateCore" }, "_devurl": "https://github.com/aravind-j/evaluatecore", "_pkgdown": "https://aravind-j.github.io/EvaluateCore/", "_searchresults": 24, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/EvaluateCore.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/aravind-j/evaluatecore", "_realowner": "aravind-j", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2020-06-03" }, { "version": "0.1.2", "date": "2021-06-12" }, { "version": "0.1.3", "date": "2022-07-03" }, { "version": "0.1.4", "date": "2025-12-18" }, { "version": "0.1.5", "date": "2026-04-22" } ], "_exports": [ "bar.evaluate.core", "box.evaluate.core", "chisquare.evaluate.core", "corr.evaluate.core", "coverage.evaluate.core", "cr.evaluate.core", "dist.evaluate.core", "diversity.evaluate.core", "freqdist.evaluate.core", "iqr.evaluate.core", "levene.evaluate.core", "pca.evaluate.core", "pdfdist.evaluate.core", "percentdiff.evaluate.core", "qq.evaluate.core", "rpr.evaluate.core", "scv.evaluate.core", "shannon.evaluate.core", "signtest.evaluate.core", "snk.evaluate.core", "ttest.evaluate.core", "vpf.evaluate.core", "vr.evaluate.core", "wilcox.evaluate.core" ], "_datasets": [ { "name": "cassava_CC", "title": "IITA Cassava Germplasm Data - Core Collection", "object": "cassava_CC", "class": [ "data.frame" ], "fields": [ "CUAL", "LNGS", "PTLC", "DSTA", "LFRT", "LBTEF", "CBTR", "NMLB", "ANGB", "CUAL9M", "LVC9M", "TNPR9M", "PL9M", "STRP", "STRC", "PSTR", "NMSR", "TTRN", "TFWSR", "TTRW", "TFWSS", "TTSW", "TTPW", "AVPW", "ARSR", "SRDM" ], "rows": 168, "table": true, "tojson": true }, { "name": "cassava_EC", "title": "IITA Cassava Germplasm Data - Entire Collection", "object": "cassava_EC", "class": [ "data.frame" ], "fields": [ "CUAL", "LNGS", "PTLC", "DSTA", "LFRT", "LBTEF", "CBTR", "NMLB", "ANGB", "CUAL9M", "LVC9M", "TNPR9M", "PL9M", "STRP", "STRC", "PSTR", "NMSR", "TTRN", "TFWSR", "TTRW", "TFWSS", "TTSW", "TTPW", "AVPW", "ARSR", "SRDM" ], "rows": 1684, "table": true, "tojson": true } ], "_help": [ { "page": "bar.evaluate.core", "title": "Bar Plots", "topics": [ "bar.evaluate.core" ] }, { "page": "box.evaluate.core", "title": "Box Plots", "topics": [ "box.evaluate.core" ] }, { "page": "cassava_CC", "title": "IITA Cassava Germplasm Data - Core Collection", "topics": [ "cassava_CC" ] }, { "page": "cassava_EC", "title": "IITA Cassava Germplasm Data - Entire Collection", "topics": [ "cassava_EC" ] }, { "page": "chisquare.evaluate.core", "title": "Chi-squared Test for Homogeneity", "topics": [ "chisquare.evaluate.core" ] }, { "page": "corr.evaluate.core", "title": "Phenotypic Correlations", "topics": [ "corr.evaluate.core" ] }, { "page": "coverage.evaluate.core", "title": "Class Coverage", "topics": [ "coverage.evaluate.core" ] }, { "page": "cr.evaluate.core", "title": "Coincidence Rate of Range", "topics": [ "cr.evaluate.core" ] }, { "page": "dist.evaluate.core", "title": "Distance Measures", "topics": [ "dist.evaluate.core" ] }, { "page": "diversity.evaluate.core", "title": "Diversity Indices", "topics": [ "diversity.evaluate.core" ] }, { "page": "freqdist.evaluate.core", "title": "Frequency Distribution Histogram", "topics": [ "freqdist.evaluate.core" ] }, { "page": "iqr.evaluate.core", "title": "Interquartile Range", "topics": [ "iqr.evaluate.core" ] }, { "page": "levene.evaluate.core", "title": "Levene's Test", "topics": [ "levene.evaluate.core" ] }, { "page": "pca.evaluate.core", "title": "Principal Component Analysis", "topics": [ "pca.evaluate.core" ] }, { "page": "pdfdist.evaluate.core", "title": "Distance Between Probability Distributions", "topics": [ "pdfdist.evaluate.core" ] }, { "page": "percentdiff.evaluate.core", "title": "Percentage Difference of Means and Variances", "topics": [ "percentdiff.evaluate.core" ] }, { "page": "qq.evaluate.core", "title": "Quantile-Quantile Plots", "topics": [ "qq.evaluate.core" ] }, { "page": "rpr.evaluate.core", "title": "Ratio of Phenotype Retained", "topics": [ "rpr.evaluate.core" ] }, { "page": "scv.evaluate.core", "title": "Synthetic Variation Coefficient", "topics": [ "scv.evaluate.core" ] }, { "page": "signtest.evaluate.core", "title": "Sign Test", "topics": [ "signtest.evaluate.core" ] }, { "page": "snk.evaluate.core", "title": "Student-Newman-Keuls Test", "topics": [ "snk.evaluate.core" ] }, { "page": "ttest.evaluate.core", "title": "Student's t Test", "topics": [ "ttest.evaluate.core" ] }, { "page": "vpf.evaluate.core", "title": "Variance of Phenotypic Frequency", "topics": [ "vpf.evaluate.core" ] }, { "page": "vr.evaluate.core", "title": "Variable Rate of Coefficient of Variation", "topics": [ "vr.evaluate.core" ] }, { "page": "wilcox.evaluate.core", "title": "Wilcoxon Rank Sum Test", "topics": [ "wilcox.evaluate.core" ] } ], "_readme": "https://github.com/aravind-j/evaluatecore/raw/HEAD/README.md", "_rundeps": [ "abind", "agricolae", "AlgDesign", "backports", "base64enc", "bit", "bit64", "boot", "broom", "bslib", "cachem", "car", "carData", "cli", "clipr", "cluster", "codetools", "colorspace", "commonmark", "cowplot", "cpp11", "crayon", "crosstalk", "curl", "Deriv", "digest", "doBy", "doParallel", "dplyr", "DT", "ellipse", "emmeans", "entropy", "estimability", "evaluate", "FactoMineR", "farver", "fastmap", "flashClust", "fontawesome", "forcats", "foreach", "forecast", "Formula", "fracdiff", "fs", "generics", "ggcorrplot", "ggplot2", "ggrepel", "ggtext", "glmnet", "glue", "GPArotation", "gridExtra", "gridtext", "gtable", "haven", "highr", "hms", "htmltools", "htmlwidgets", "isoband", "iterators", "jomo", "jpeg", "jquerylib", "jsonlite", "knitr", "kSamples", "labeling", "later", "lattice", "lazyeval", "leaps", "lifecycle", "litedown", "lme4", "lmtest", "magrittr", "markdown", "MASS", "mathjaxr", "Matrix", "MatrixModels", "memoise", "mgcv", "mice", "microbenchmark", "mime", "minqa", "missMDA", "mitml", "mnormt", "modelr", "multcompView", "mvtnorm", "nlme", "nloptr", "nnet", "numDeriv", "ordinal", "otel", "pan", "pbkrtest", "permute", "pillar", "pkgconfig", "plyr", "png", "prettyunits", "progress", "promises", "psych", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "readr", "reformulas", "reshape2", "rlang", "rmarkdown", "rpart", "S7", "sass", "scales", "scatterplot3d", "shape", "SparseM", "stringi", "stringr", "SuppDists", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "tzdb", "ucminf", "urca", "utf8", "vctrs", "vegan", "viridisLite", "vroom", "withr", "xfun", "xml2", "yaml", "zoo" ], "_score": 3.982271233039568, "_indexed": true, "_nocasepkg": "evaluatecore", "_universes": [ "aravind-j" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.5.900", "date": "2026-06-06T10:10:20.000Z", "distro": "noble", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "04c9ff10855c66d5d7daa744cb903ef42c55ad7e7b9fbd9504deb82b6878ed73", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.6.0", "os": "linux", "version": "0.1.5.900", "date": "2026-06-06T10:10:23.000Z", "distro": "noble", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "55c774f5cfa4db69f3ea1894e8bef2171bb282e1a59f2b24ee7ce58c9892a954", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.5.3", "os": "mac", "version": "0.1.5.900", "date": "2026-06-06T10:08:40.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "55a9effcc9935b7fad00586f719edfa07eb3b30ea2e254c70fd5f12a95dccc25", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.6.0", "os": "mac", "version": "0.1.5.900", "date": "2026-06-06T10:08:31.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "6c8fc74b1e31101427a593dc784bec1185a90199a13900868d35524041aef8f5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.5.900", "date": "2026-06-06T10:09:53.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "27c1f81ddbd3d7ed65c73dfce7e771a92ce641e653b28ad8ca410fac8fa61157", "status": "success", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.7.0", "os": "win", "version": "0.1.5.900", "date": "2026-06-06T10:08:31.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "895057a3976d12f59d41173a90d81c2022b9453b0836c0ed62678f2d98777af2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.5.3", "os": "win", "version": "0.1.5.900", "date": "2026-06-06T10:08:26.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "31c25b2a218588b21446f9de15ffdd71bf2b1ac5e0706ec55601cac85d74f6e7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" }, { "r": "4.6.0", "os": "win", "version": "0.1.5.900", "date": "2026-06-06T10:08:17.000Z", "commit": "d11d0c1896f0d3de0b38e1a893053c2a4d680330", "fileid": "990e52cfd8790d84f3a39394b3d4066239869053975fb0b1e93deca75afa23c9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/27059336843" } ] }