1 Overview | 2 R software | 3 Getting Started | 3.1 Installing R | 3.2 Installing RStudio | 3.3 The RStudio Interface | 3.3.1 Console | 3.3.2 Source | 3.3.3 Environment|History|Connections | 3.3.4 Files|Plots|Packages|Help|Viewer | 4 Some Basics | 4.1 Working Directory | 4.2 Expression and Assignment | 4.3 Objects and Functions | 4.3.1 Vector | 4.3.2 Factor | 4.3.3 Matrix | 4.3.4 List | 4.3.5 Data Frame | 4.3.6 Functions | 4.4 Special Elements | 4.5 Indexing | 4.6 Help Documentation | 4.7 Packages | 4.8 Importing and Exporting Tabular Data | 4.9 Additional Resources | 5 Installation of augmentedRCBD | 6 Data Format | 7 Data Analysis for a Single Trait | 7.1 augmentedRCBD() | 7.2 print.augmentedRCBD() | 7.3 describe.augmentedRCBD() | 7.4 freqdist.augmentedRCBD() | 7.5 gva.augmentedRCBD() | 7.5 report.augmentedRCBD() | 8 Data Analysis for a Multiple Traits | 8.1 augmentedRCBD.bulk() | 8.2 print.augmentedRCBD.bulk() | 8.3 report.augmentedRCBD.bulk() | 9 Citing augmentedRCBD | 10 Session Info | References

Overview | Installation | Version History | Germination count data | Single-value germination indices | Examples | GermPercent() | FirstGermTime(), LastGermTime(), PeakGermTime(), TimeSpreadGerm() | t50() | MeanGermTime(), VarGermTime(), SEGermTime(), CVGermTime() | MeanGermRate(), CVG(), VarGermRate(), SEGermRate(), GermRateRecip() | GermSpeed(), GermSpeedAccumulated(), GermSpeedCorrected() | WeightGermPercent() | MeanGermPercent(), MeanGermNumber() | TimsonsIndex(), GermRateGeorge() | GermIndex() | EmergenceRateIndex() | PeakValue(), GermValue() | CUGerm() | GermSynchrony(), GermUncertainty() | Non-linear regression analysis | Four-parameter hill function | FourPHFfit() | Wrapper functions | germination.indices() | FourPHFfit.bulk() | Citing germinationmetrics | Session Info | References

Introduction | Version History | Installation | Data Format | Data Pre-processing | Generation of KWIC Index | Retrieval of Probable Duplicate Sets | Methods | Matching Strategies | Memory and Speed Constraints | Set Review, Modification and Validation | Other Functions | Citing PGRdup | Session Info | References

Introduction | Installation | Basic usage | Melting temperature computation | Approximative methods | Nearest neighbour methods | Perfectly matching sequences | GU wobble base pairs effect | Single mismatch effect | Tandem mismatches effect | Single dangling end effect | Double dangling end effect | Long dangling end effect | Internal loop effect | Single bulge loop effect | Long bulge loop effect | CNG repeats effect | Inosine bases effect | Hydroxyadenine bases effect | Azobenzenes effect | Single Locked nucleic acid effect | Consecutive Locked nucleic acids effect | Consecutive Locked nucleic acids with a single mismatch effect | Corrections | Nucleic acid concentration | Ion corrections | Sodium corrections | Magnesium corrections | Mixed Sodium and Magnesium corrections | Sodium equivalent concentration methods | Denaturing agent corrections | DMSO corrections | Formamide corrections | Equivalent options in MELTING 5 | Batch computation | Further reading | Citing rmelting | Session Info | References