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The germinationmetrics Package: A Brief Introduction10 months ago
Overview | Installation | Version History | Germination count data | Single-value germination indices | Examples | GermPercent() | FirstGermTime(), LastGermTime(), PeakGermTime(), TimeSpreadGerm() | t50() | MeanGermTime(), VarGermTime(), SEGermTime(), CVGermTime() | MeanGermRate(), CVG(), VarGermRate(), SEGermRate(), GermRateRecip() | GermSpeed(), GermSpeedAccumulated(), GermSpeedCorrected() | WeightGermPercent() | MeanGermPercent(), MeanGermNumber() | TimsonsIndex(), GermRateGeorge() | GermIndex() | EmergenceRateIndex() | PeakValue(), GermValue() | CUGerm() | GermSynchrony(), GermUncertainty() | Non-linear regression analysis | Four-parameter hill function | FourPHFfit() | Wrapper functions | germination.indices() | FourPHFfit.bulk() | Citing germinationmetrics | Session Info | References
An Introduction to PGRdup Package10 months ago
Introduction | Version History | Installation | Data Format | Data Pre-processing | Generation of KWIC Index | Retrieval of Probable Duplicate Sets | Methods | Matching Strategies | Memory and Speed Constraints | Set Review, Modification and Validation | Other Functions | Citing PGRdup | Session Info | References
Computation of melting temperature of nucleic acid duplexes with rmelting4 years ago
Introduction | Installation | Basic usage | Melting temperature computation | Approximative methods | Nearest neighbour methods | Perfectly matching sequences | GU wobble base pairs effect | Single mismatch effect | Tandem mismatches effect | Single dangling end effect | Double dangling end effect | Long dangling end effect | Internal loop effect | Single bulge loop effect | Long bulge loop effect | CNG repeats effect | Inosine bases effect | Hydroxyadenine bases effect | Azobenzenes effect | Single Locked nucleic acid effect | Consecutive Locked nucleic acids effect | Consecutive Locked nucleic acids with a single mismatch effect | Corrections | Nucleic acid concentration | Ion corrections | Sodium corrections | Magnesium corrections | Mixed Sodium and Magnesium corrections | Sodium equivalent concentration methods | Denaturing agent corrections | DMSO corrections | Formamide corrections | Equivalent options in MELTING 5 | Batch computation | Further reading | Citing rmelting | Session Info | References