Package: DiversityStats 0.1.0.9000
DiversityStats: Diversity Indices with Statistical Inference
Provides a comprehensive framework for analyzing diversity from frequency/abundance count data. Implements a wide range of classical and entropy-based diversity indices, including Berger-Parker, Simpson (and related variants), Shannon, Brillouin, McIntosh, Margalef, Menhinick and Smith-Wilson. Supports permutation-based hypothesis tests for comparing groups with respect to diversity (global and pairwise comparisons), as well as confidence interval estimation using multiple bootstrap methods. Includes functionality for generating diversity profiles based on parametric families such as Hill numbers, Rényi entropy, and Tsallis entropy. The methods are applicable to ecological community data (species abundance counts) and genetic or phenotypic class frequency data.
Authors:
DiversityStats_0.1.0.9000.tar.gz
DiversityStats_0.1.0.9000.zip(r-4.7)DiversityStats_0.1.0.9000.zip(r-4.6)DiversityStats_0.1.0.9000.zip(r-4.5)
DiversityStats_0.1.0.9000.tgz(r-4.6-any)DiversityStats_0.1.0.9000.tgz(r-4.5-any)
DiversityStats_0.1.0.9000.tar.gz(r-4.7-any)DiversityStats_0.1.0.9000.tar.gz(r-4.6-any)
DiversityStats_0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DiversityStats/json (API)
NEWS
| # Install 'DiversityStats' in R: |
| install.packages('DiversityStats', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aravind-j/diversitystats/issues
Pkgdown/docs site:https://aravind-j.github.io
berger-parkerbootstrap-cibrillouin-indexdiversity-indicesdiversity-measuresdiversity-profilegini-simpsonhill-numbermargalefs-richnessmcintosh-diversitymenhinicks-richnesspermutation-testrenyi-entropyshannon-entropyshannon-weavershannon-wienersimpsons-indexsmith-and-wilson-evennesstsallis-entropy
Last updated from:16f2299579. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 230 | ||
| source / vignettes | OK | 222 | ||
| linux-release-x86_64 | OK | 170 | ||
| macos-release-arm64 | OK | 120 | ||
| macos-oldrel-arm64 | OK | 98 | ||
| windows-devel | OK | 109 | ||
| windows-release | OK | 111 | ||
| windows-oldrel | OK | 102 | ||
| wasm-release | OK | 141 |
Exports:berger_parkerberger_parker_reciprocalbootstrap.cibrillouin_indexdiversity.calcdiversity.comparediversity.profilegini_simpsonheip_evennesshill_evennesshill_numbermargalef_indexmcintosh_diversitymcintosh_evennessmenhinick_indexperm.test.globalperm.test.pairwiserenyi_entropyshannonshannon_ensshannon_maxshannon_relativesimpsonsimpson_evennesssimpson_maxsimpson_reciprocalsimpson_relativesmith_wilsontsallis_entropy
Dependencies:bootclicpp11dplyrgenericsgluelifecyclemagrittrmathjaxrmultcompViewpillarpkgconfigpurrrR6rbibutilsRdpackrlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bootstrap Confidence Intervals | bootstrap.ci |
| Diversity Index Functions | berger_parker berger_parker_reciprocal brillouin_index diversity_functions gini_simpson heip_evenness hill_evenness hill_number margalef_index mcintosh_diversity mcintosh_evenness menhinick_index renyi_entropy shannon shannon_ens shannon_max shannon_relative simpson simpson_evenness simpson_max simpson_reciprocal simpson_relative smith_wilson tsallis_entropy |
| Compute Diversity Measures | diversity.calc |
| Compare Diversity Measures | diversity.compare |
| Generate Diversity Profiles for Parametric Indices | diversity.profile |
| Permutation Tests | perm.test.global perm.test.pairwise permutation_tests |
