{ "_id": "6a1f2a9db401979e73424ab4", "Package": "DiversityStats", "Title": "Diversity Indices with Statistical Inference", "Version": "0.1.0.9000", "Authors@R": "c(\nperson(given = \"J.\", family = \"Aravind\",\nemail = \"j.aravind@icar.org.in\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-4791-442X\")),\nperson(given = \"Suman\", family = \"Roy\",\nemail = \"suman.roy@icar.org.in\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-5612-8415\")),\nperson(given = \"Anju Mahendru\", family = \"Singh\",\nemail = \"anju.singh@icar.org.in\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6958-1630\")),\nperson(\"ICAR-NBGPR\",\nrole = c(\"cph\"),\ncomment = c(ROR = \"https://ror.org/00scbd467\",\nurl = \"https://nbpgr.org.in/\")))", "Description": "Provides a comprehensive framework for analyzing diversity\nfrom frequency/abundance count data. Implements a wide range of\nclassical and entropy-based diversity indices, including\nBerger-Parker, Simpson (and related variants), Shannon,\nBrillouin, McIntosh, Margalef, Menhinick and Smith-Wilson.\nSupports permutation-based hypothesis tests for comparing\ngroups with respect to diversity (global and pairwise\ncomparisons), as well as confidence interval estimation using\nmultiple bootstrap methods. Includes functionality for\ngenerating diversity profiles based on parametric families such\nas Hill numbers, Rényi entropy, and Tsallis entropy. The\nmethods are applicable to ecological community data (species\nabundance counts) and genetic or phenotypic class frequency\ndata.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "BuildManual": "TRUE", "RdMacros": "mathjaxr, Rdpack", "Copyright": "2025-2026, ICAR-NBPGR", "URL": "https://cran.r-project.org/package=PGRdup,\nhttps://github.com/aravind-j/DiversityStats,\nhttps://doi.org/10.5281/zenodo.20056661,\nhttps://aravind-j.github.io/DiversityStats/", "BugReports": "https://github.com/aravind-j/DiversityStats/issues", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://aravind-j.r-universe.dev", "Date/Publication": "2026-05-15 12:53:40 UTC", "RemoteUrl": "https://github.com/aravind-j/diversitystats", "RemoteRef": "HEAD", "RemoteSha": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 14:01:52 UTC", "User": "root" }, "Author": "J. Aravind [aut, cre] (ORCID: ),\nSuman Roy [aut] (ORCID: ),\nAnju Mahendru Singh [aut] (ORCID:\n),\nICAR-NBGPR [cph] (ROR: , url:\nhttps://nbpgr.org.in/)", "Maintainer": "J. Aravind ", "MD5sum": "32aad9d7acb2472e2a6cabe204be97e0", "_user": "aravind-j", "_type": "src", "_file": "DiversityStats_0.1.0.9000.tar.gz", "_fileid": "9279858718d197e02677d9692ff19d70a0472f50cd0d482ff06cb83b28877868", "_filesize": 510080, "_sha256": "9279858718d197e02677d9692ff19d70a0472f50cd0d482ff06cb83b28877868", "_created": "2026-05-15T14:01:52.000Z", "_published": "2026-06-02T19:10:21.887Z", "_distro": "noble", "_jobs": [ { "job": 79151104229, "time": 230, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7018864885" }, { "job": 79151105128, "time": 170, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7018845639" }, { "job": 79151104660, "time": 98, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7018821477" }, { "job": 79151104457, "time": 120, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7018828733" }, { "job": 79151103804, "time": 222, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7018787273" }, { "job": 79151103835, "time": 141, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367364786" }, { "job": 79151104384, "time": 109, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7018825367" }, { "job": 79151104716, "time": 102, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7018822842" }, { "job": 79151104416, "time": 111, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7018825638" } ], "_buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/aravind-j/diversitystats", "_commit": { "id": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "author": "GitHub Actions ", "committer": "GitHub Actions ", "message": "Re-build README.md\n", "time": 1778849620 }, "_maintainer": { "name": "J. Aravind", "email": "j.aravind@icar.org.in", "login": "aravind-j", "orcid": "0000-0002-4791-442X", "uuid": 13416379 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "boot", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "mathjaxr", "role": "Imports" }, { "package": "multcompView", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "cluster", "role": "Suggests" }, { "package": "EvaluateCore", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "pander", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "vegan", "role": "Suggests" } ], "_owner": "aravind-j", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2026-09", "n": 9 }, { "week": "2026-18", "n": 13 }, { "week": "2026-19", "n": 4 }, { "week": "2026-20", "n": 3 } ], "_tags": [ { "name": "CRAN_0.1.0", "date": "2026-04-30" } ], "_topics": [ "berger-parker", "bootstrap-ci", "brillouin-index", "diversity-indices", "diversity-measures", "diversity-profile", "gini-simpson", "hill-number", "margalefs-richness", "mcintosh-diversity", "menhinicks-richness", "permutation-test", "renyi-entropy", "shannon-entropy", "shannon-weaver", "shannon-wiener", "simpsons-index", "smith-and-wilson-evenness", "tsallis-entropy" ], "_stars": 0, "_contributors": [ { "user": "aravind-j", "count": 28, "uuid": 13416379 } ], "_userbio": { "uuid": 13416379, "type": "user", "name": "J. Aravind", "description": "Scientist,\r\nDivision of Germplasm Conservation,\r\nICAR-National Bureau of Plant Genetic Resources" }, "_downloads": { "count": 171, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DiversityStats" }, "_devurl": "https://github.com/aravind-j/diversitystats", "_pkgdown": "https://aravind-j.github.io/DiversityStats/", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DiversityStats.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/aravind-j/diversitystats", "_realowner": "aravind-j", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2026-05-04" } ], "_exports": [ "berger_parker", "berger_parker_reciprocal", "bootstrap.ci", "brillouin_index", "diversity.calc", "diversity.compare", "diversity.profile", "gini_simpson", "heip_evenness", "hill_evenness", "hill_number", "margalef_index", "mcintosh_diversity", "mcintosh_evenness", "menhinick_index", "perm.test.global", "perm.test.pairwise", "renyi_entropy", "shannon", "shannon_ens", "shannon_max", "shannon_relative", "simpson", "simpson_evenness", "simpson_max", "simpson_reciprocal", "simpson_relative", "smith_wilson", "tsallis_entropy" ], "_help": [ { "page": "bootstrap.ci", "title": "Bootstrap Confidence Intervals", "topics": [ "bootstrap.ci" ] }, { "page": "diversity_functions", "title": "Diversity Index Functions", "topics": [ "berger_parker", "berger_parker_reciprocal", "brillouin_index", "diversity_functions", "gini_simpson", "heip_evenness", "hill_evenness", "hill_number", "margalef_index", "mcintosh_diversity", "mcintosh_evenness", "menhinick_index", "renyi_entropy", "shannon", "shannon_ens", "shannon_max", "shannon_relative", "simpson", "simpson_evenness", "simpson_max", "simpson_reciprocal", "simpson_relative", "smith_wilson", "tsallis_entropy" ] }, { "page": "diversity.calc", "title": "Compute Diversity Measures", "topics": [ "diversity.calc" ] }, { "page": "diversity.compare", "title": "Compare Diversity Measures", "topics": [ "diversity.compare" ] }, { "page": "diversity.profile", "title": "Generate Diversity Profiles for Parametric Indices", "topics": [ "diversity.profile" ] }, { "page": "permutation_tests", "title": "Permutation Tests", "topics": [ "perm.test.global", "perm.test.pairwise", "permutation_tests" ] } ], "_readme": "https://github.com/aravind-j/diversitystats/raw/HEAD/README.md", "_rundeps": [ "boot", "cli", "cpp11", "dplyr", "generics", "glue", "lifecycle", "magrittr", "mathjaxr", "multcompView", "pillar", "pkgconfig", "purrr", "R6", "rbibutils", "Rdpack", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_score": 3.7781512503836434, "_indexed": true, "_nocasepkg": "diversitystats", "_universes": [ "aravind-j" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0.9000", "date": "2026-05-15T14:05:31.000Z", "distro": "noble", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "50a8b93db0c58a1f99c9e7a4fbe615cf4d84f2b5ca3a40a873cdf18d58df191d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0.9000", "date": "2026-05-15T14:04:34.000Z", "distro": "noble", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "a47e08155065dec003de207dd7e0e57ede7330569bce7432032a0b434b0bc55a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0.9000", "date": "2026-05-15T14:03:31.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "0d9f1ddf334db8f66e6df52042b1411306f3945d84a19a426947f3c4cbb38577", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.6.0", "os": "mac", "version": "0.1.0.9000", "date": "2026-05-15T14:03:44.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "1371dea47ac08389c6ef891f31654689458b51d72274dc192968883da18d78fb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.7.0", "os": "win", "version": "0.1.0.9000", "date": "2026-05-15T14:03:27.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "e3de14fd3c63071073572e8d5daf579862025ec153b9ba68d6cdbe8af65daf1a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.5.3", "os": "win", "version": "0.1.0.9000", "date": "2026-05-15T14:03:18.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "22bb50611d38e034bb11dd59316fcda6bd352b120a2045c806af633df3f5c8dc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.6.0", "os": "win", "version": "0.1.0.9000", "date": "2026-05-15T14:03:29.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "e48fdedc0828354563173ed7b814376e6ff95d43690711222d87e5d03f2f6103", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0.9000", "date": "2026-06-02T19:09:55.000Z", "commit": "16f2299579d11f5c301fe8f9b8f523d123d51ae6", "fileid": "5728193fa228932722ebb91f36e40c83ae79b6c8ce140d751a9ee73e552042a5", "status": "success", "buildurl": "https://github.com/r-universe/aravind-j/actions/runs/25921828874" } ] }