Package: SampleCore 0.1.0.9000

SampleCore: Sampling Strategies for Constructing Core Collections

Implements multiple allocation and selection strategies of sampling to construct core collections primarily from clustered or grouped germplasm collection data. Provides methods for allocating entries to clusters/groups based on group sizes, group-wise distance-based diversity metrics, and group-wise diversity index estimates. Includes procedures for selecting entries within clusters/groups through random sampling, genetic distance-based approaches, and optimized diversity metric–based selection methods. See the package documentation for more, including full list of references for the methods implemented.

Authors:J. Aravind [aut, cre], Suman Roy [aut], Anju Mahendru Singh [aut], ICAR-NBGPR [cph]

SampleCore_0.1.0.9000.tar.gz
SampleCore_0.1.0.9000.zip(r-4.7)SampleCore_0.1.0.9000.zip(r-4.6)SampleCore_0.1.0.9000.zip(r-4.5)
SampleCore_0.1.0.9000.tgz(r-4.6-any)SampleCore_0.1.0.9000.tgz(r-4.5-any)
SampleCore_0.1.0.9000.tar.gz(r-4.7-any)SampleCore_0.1.0.9000.tar.gz(r-4.6-any)
SampleCore_0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
SampleCore/json (API)
NEWS

# Install 'SampleCore' in R:
install.packages('SampleCore', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aravind-j/samplecore/issues

Pkgdown/docs site:https://aravind-j.github.io

Datasets:

On CRAN:

Conda:

core-collectionsgenebankgermplasmpgrplant-genetic-resources

3.54 score 13 downloads 7 exports 51 dependencies

Last updated from:f9ca14b6fe. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK194
source / vignettesOK231
linux-release-x86_64OK200
macos-release-arm64OK183
macos-oldrel-arm64OK95
windows-develOK487
windows-releaseOK541
windows-oldrelOK467
wasm-releaseOK165

Exports:allocate.basicallocate.distanceallocate.diversityplot_distselect.distanceselect.diversityselect.random

Dependencies:bootcliclustercodetoolscpp11DiversityStatsdplyrfarverforeachgenericsggplot2gluegtableigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSmathjaxrMatrixmgcvmultcompViewnlmepermutepillarpkgconfigprospectrpurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRdpackrlangRtsneS7scalesstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithr