Package: SampleCore 0.1.0.9000

SampleCore: Sampling Strategies for Constructing Core Collections

Implements multiple allocation and selection strategies of sampling to construct core collections primarily from clustered or grouped germplasm collection data. Provides methods for allocating entries to clusters/groups based on group sizes, group-wise distance-based diversity metrics, and group-wise diversity index estimates. Includes procedures for selecting entries within clusters/groups through random sampling, genetic distance-based approaches, and optimized diversity metric–based selection methods. See the package documentation for more, including full list of references for the methods implemented.

Authors:J. Aravind [aut, cre], Suman Roy [aut], Anju Mahendru Singh [aut], ICAR-NBGPR [cph]

SampleCore_0.1.0.9000.tar.gz
SampleCore_0.1.0.9000.zip(r-4.7-any)SampleCore_0.1.0.9000.zip(r-4.6-any)SampleCore_0.1.0.9000.zip(r-4.5-any)
SampleCore_0.1.0.9000.tgz(r-4.6-any)SampleCore_0.1.0.9000.tgz(r-4.5-any)
SampleCore_0.1.0.9000.tar.gz(r-4.7-any)SampleCore_0.1.0.9000.tar.gz(r-4.6-any)
SampleCore_0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SampleCore/json (API)

# Install 'SampleCore' in R:
install.packages('SampleCore', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aravind-j/samplecore/issues

Pkgdown/docs site:https://aravind-j.github.io

Datasets:

On CRAN:

Conda:

core-collectionsgenebankgermplasmpgrplant-genetic-resources

3.54 score 2 scripts 332 downloads 7 exports 51 dependencies

Last updated from:f9ca14b6fe. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK184
source / vignettesOK255
linux-releaseOK205
macos-releaseOK285
macos-oldrelOK348
windows-develOK128
windows-releaseOK117
windows-oldrelOK123
wasm-releaseOK165

Exports:allocate.basicallocate.distanceallocate.diversityplot_distselect.distanceselect.diversityselect.random

Dependencies:bootcliclustercodetoolscpp11DiversityStatsdplyrfarverforeachgenericsggplot2gluegtableigraphisobanditeratorslabelinglatticelifecyclemagrittrMASSmathjaxrMatrixmgcvmultcompViewnlmepermutepillarpkgconfigprospectrpurrrR6rbibutilsRColorBrewerRcppRcppArmadilloRdpackrlangRtsneS7scalesstringistringrtibbletidyrtidyselectutf8vctrsveganviridisLitewithr