Package: PGRdup 0.2.3.9

PGRdup: Discover Probable Duplicates in Plant Genetic Resources Collections

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

Authors:J. Aravind [aut, cre], J. Radhamani [aut], Kalyani Srinivasan [aut], B. Ananda Subhash [aut], Rishi Kumar Tyagi [aut], ICAR-NBGPR [cph], Maurice Aubrey [ctb], Kevin Atkinson [ctb], Lawrence Philips [ctb]

PGRdup_0.2.3.9.tar.gz
PGRdup_0.2.3.9.zip(r-4.5)PGRdup_0.2.3.9.zip(r-4.4)PGRdup_0.2.3.9.zip(r-4.3)
PGRdup_0.2.3.9.tgz(r-4.5-x86_64)PGRdup_0.2.3.9.tgz(r-4.5-arm64)PGRdup_0.2.3.9.tgz(r-4.4-x86_64)PGRdup_0.2.3.9.tgz(r-4.4-arm64)PGRdup_0.2.3.9.tgz(r-4.3-x86_64)PGRdup_0.2.3.9.tgz(r-4.3-arm64)
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PGRdup_0.2.3.9.tgz(r-4.4-emscripten)PGRdup_0.2.3.9.tgz(r-4.3-emscripten)
PGRdup.pdf |PGRdup.html✨
PGRdup/json (API)
NEWS

# Install 'PGRdup' in R:
install.packages('PGRdup', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aravind-j/pgrdup/issues

Pkgdown site:https://aravind-j.github.io

Datasets:
  • GN1000 - Sample groundnut PGR passport data

On CRAN:

Conda:

double-metaphonedouble-metaphone-algorithmnatural-language-processingpgrplant-genetic-resourcesrecord-linkage

4.06 score 1 stars 23 scripts 470 downloads 20 exports 34 dependencies

Last updated 2 years agofrom:90e0e62254. Checks:4 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 22 2025
R-4.5-win-x86_64NOTEFeb 22 2025
R-4.5-mac-x86_64NOTEFeb 22 2025
R-4.5-mac-aarch64NOTEFeb 22 2025
R-4.5-linux-x86_64NOTEFeb 22 2025
R-4.4-win-x86_64NOTEFeb 22 2025
R-4.4-mac-x86_64NOTEFeb 22 2025
R-4.4-mac-aarch64NOTEFeb 22 2025
R-4.3-win-x86_64OKFeb 22 2025
R-4.3-mac-x86_64OKFeb 22 2025
R-4.3-mac-aarch64OKFeb 22 2025

Exports:AddProbDupDataCleanDisProbDupDoubleMetaphoneKWCountsKWICMergeKWMergePrefixMergeProbDupMergeSuffixParseProbDupprint.KWICprint.ProbDupProbDupread.genesysReconstructProbDupReviewProbDupSplitProbDupValidatePrimKeyViewProbDup

Dependencies:clicolorspacecpp11data.tablefansifarverggplot2gluegridExtragtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalesstringdiststringitibbleutf8vctrsviridisLitewithr

An Introduction to PGRdup Package

Aravind, J.^1^, Radhamani, J.^1^, Kalyani Srinivasan^1^, Ananda Subhash, B.^2^, and Tyagi, R. K.^1^

Rendered fromIntroduction.Rmdusingknitr::rmarkdown_notangleon Feb 22 2025.

Last update: 2023-08-30
Started: 2017-08-03