Introduction | Version History | Installation | Data Format | Data Pre-processing | Generation of KWIC Index | Retrieval of Probable Duplicate Sets | Methods | Matching Strategies | Memory and Speed Constraints | Set Review, Modification and Validation | Other Functions | Citing PGRdup | Session Info | References
Package: PGRdup 0.3.0.9000
PGRdup: Discover Probable Duplicates in Plant Genetic Resources Collections
Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.
Authors:
PGRdup_0.3.0.9000.tar.gz
PGRdup_0.3.0.9000.zip(r-4.7-x86_64)PGRdup_0.3.0.9000.zip(r-4.7-arm64)PGRdup_0.3.0.9000.zip(r-4.6-x86_64)PGRdup_0.3.0.9000.zip(r-4.6-arm64)PGRdup_0.3.0.9000.zip(r-4.5-x86_64)
PGRdup_0.3.0.9000.tgz(r-4.6-x86_64)PGRdup_0.3.0.9000.tgz(r-4.6-arm64)PGRdup_0.3.0.9000.tgz(r-4.5-x86_64)PGRdup_0.3.0.9000.tgz(r-4.5-arm64)
PGRdup_0.3.0.9000.tar.gz(r-4.7-arm64)PGRdup_0.3.0.9000.tar.gz(r-4.7-x86_64)PGRdup_0.3.0.9000.tar.gz(r-4.6-arm64)PGRdup_0.3.0.9000.tar.gz(r-4.6-x86_64)
PGRdup_0.3.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PGRdup/json (API)
| # Install 'PGRdup' in R: |
| install.packages('PGRdup', repos = c('https://aravind-j.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aravind-j/pgrdup/issues
Pkgdown/docs site:https://aravind-j.github.io
Datasets:
- GN1000 - Sample groundnut PGR passport data
double-metaphonedouble-metaphone-algorithmnatural-language-processingpgrplant-genetic-resourcesrecord-linkage
Last updated from:76cb3b2e05. Checks:4 NOTE, 11 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 140 | ||
| linux-devel-x86_64 | NOTE | 139 | ||
| source / vignettes | OK | 200 | ||
| linux-release-arm64 | OK | 131 | ||
| linux-release-x86_64 | OK | 120 | ||
| macos-release-arm64 | OK | 133 | ||
| macos-release-x86_64 | OK | 250 | ||
| macos-oldrel-arm64 | OK | 122 | ||
| macos-oldrel-x86_64 | OK | 296 | ||
| windows-devel-arm64 | NOTE | 356 | ||
| windows-devel-x86_64 | NOTE | 130 | ||
| windows-release-arm64 | OK | 345 | ||
| windows-release-x86_64 | OK | 85 | ||
| windows-oldrel-x86_64 | OK | 89 | ||
| wasm-release | OK | 105 |
Exports:AddProbDupDataCleanDisProbDupDoubleMetaphoneKWCountsKWICMergeKWMergePrefixMergeProbDupMergeSuffixParseProbDupprint.KWICprint.ProbDupProbDupread.genesysReconstructProbDupReviewProbDupSplitProbDupValidatePrimKeyViewProbDup
Dependencies:clicpp11data.tablefarverggplot2gluegridExtragtableigraphisobandlabelinglatticelifecyclemagrittrMatrixpkgconfigR6RColorBrewerrlangS7scalesstringdiststringivctrsviridisLitewithr
