Package: PGRdup
Title: Discover Probable Duplicates in Plant Genetic Resources
        Collections
Version: 0.3.0.9000
Authors@R: c(
    person(given = "J.", family = "Aravind",
           email = "j.aravind@icar.org.in",
           role = c("aut", "cre"),
		       comment = c(ORCID = "0000-0002-4791-442X")),
    person(given = "J.", family = "Radhamani",
           email = "jalli.radhamani@icar.gov.in",
		       role = "aut"),
    person(family = c("Kalyani Srinivasan"),
           email = "kalyani.srinivasan@icar.gov.in",
		       role = "aut"),
    person(given = "B.", family = c("Ananda Subhash"),
           email = "anandasubhash@gmail.com",
		       role = "aut"),
    person(given = c("Rishi", "Kumar"), family = "Tyagi",
           email = "rishi.tyagi@icar.gov.in",
		       role = "aut"),
    person("ICAR-NBGPR",
           role = "cph",
		       comment = c(ROR = "https://ror.org/00scbd467",
		                   url = "https://nbpgr.org.in/")),
    person(given = "Maurice", family = "Aubrey",
           email = "maurice@hevanet.com",
           comment = "Double Metaphone",
           role = "ctb"),
    person(given = "Kevin", family = "Atkinson",
           email = "kevina@users.sourceforge.net",
           comment = "Double Metaphone",
           role = "ctb"),
    person(given = "Lawrence", family = "Philips",
           comment = "Double Metaphone",
           role = "ctb"))
Description: Provides functions to aid the identification of
        probable/possible duplicates in Plant Genetic Resources (PGR)
        collections using 'passport databases' comprising of
        information records of each constituent sample. These include
        methods for cleaning the data, creation of a searchable Key
        Word in Context (KWIC) index of keywords associated with sample
        records and the identification of nearly identical records with
        similar information by fuzzy, phonetic and semantic matching of
        keywords.
Depends: R (>= 4.1.0)
Imports: data.table (>= 1.9.3), igraph, stringdist (>= 0.9.4), stringi,
        ggplot2, grid, gridExtra, methods, utils, stats
Suggests: diagram, wordcloud, microbenchmark, XML, httr, RCurl, knitr,
        rmarkdown, pander
Copyright: 2014-2026, ICAR-NBPGR
License: GPL-2 | GPL-3
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.3.3
URL: https://cran.r-project.org/package=PGRdup,
        https://github.com/aravind-j/PGRdup,
        https://doi.org/10.5281/zenodo.841963,
        https://aravind-j.github.io/PGRdup/,
        https://www.rdocumentation.org/packages/PGRdup
BugReports: https://github.com/aravind-j/PGRdup/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://aravind-j.r-universe.dev
Date/Publication: 2026-08-03 08:26:46 UTC
RemoteUrl: https://github.com/aravind-j/pgrdup
RemoteRef: HEAD
RemoteSha: 76cb3b2e05a62a61aa1cf2dc6fa02841f62aba54
NeedsCompilation: yes
Packaged: 2026-10-10 13:04:55 UTC; root
Author: J. Aravind [aut, cre] (ORCID: <https://orcid.org/0000-0002-4791-442X>),
  J. Radhamani [aut],
  Kalyani Srinivasan [aut],
  B. Ananda Subhash [aut],
  Rishi Kumar Tyagi [aut],
  ICAR-NBGPR [cph] (ROR: <https://ror.org/00scbd467>, url:
    https://nbpgr.org.in/),
  Maurice Aubrey [ctb] (Double Metaphone),
  Kevin Atkinson [ctb] (Double Metaphone),
  Lawrence Philips [ctb] (Double Metaphone)
Maintainer: J. Aravind <j.aravind@icar.org.in>